We signed up for MTD in March, and the direct debit for February (our last non-MTD return) subsequently wasn't taken. We contacted HMRC and was advised to make a manual payment, which we did so. However we have now noticed that the March (1st MTD return) Direct Debit hasn't been taken either.
Looking at the VAT section of our Government Gateway account it would appear that the manual payment that we made has been allotted against the March MTD return (with a refund, as the February return was a higher amount). So, the February return still hasn't been paid for, even though I have tried to pay it.
I will be contacting HMRC in the morning, but I was wondering if anyone else has had this problem, and what the outcome was?